Installing and Running FastQC Tool

fastqc_install()

Install FastQC Tool

fastqc()

Run FastQC Tool

Aggregating and Summarizing Multiple FastQC Reports

qc_aggregate() summary(<qc_aggregate>) qc_stats()

Aggregate FastQC Reports for Multiple Samples

Inspecting Problems

qc_fails() qc_warns() qc_problems()

Inspect Problems in Aggregated FastQC Reports

Importing and Plotting FastQC Reports

qc_read()

Read FastQC Data

qc_read_collection()

Read a collection of FastQC data files

qc_plot() print(<qctable>)

Plot FastQC Results

qc_plot_collection()

Plot FastQC Results of multiple samples

Building One-Sample and Multi-QC Reports

qc_report()

Build a QC Report

Others

qc_unzip()

Unzip Files in the FastQC Result Directory