Run FastQC Tool

fastqc(fq.dir = getwd(), qc.dir = NULL, threads = 4)

Arguments

fq.dir
path to the directory containing fastq files. Default is the current working directory.
qc.dir
path to the FastQC result directory. If NULL, a directory named fastqc_results is created in the current working directory.
threads
the number of threads to be used. Default is 4.

Value

Create a directory containing the reports

Examples

## Not run: ------------------------------------ # # Run FastQC: generates a QC directory # fastqc(fq.dir) ## ---------------------------------------------